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MCP server

tomesphere

By tomesphereAll Tomesphere servers

Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.

Listed on

First seen 2 Oct 2026. One server, whatever directories list it: each directory listing keeps its own page and history.

2
Directories
1 via MCP Toplist
9
Tools
From an anonymous probe
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ToolBench grade
Not graded by Arcade
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GitHub stars
No repository data

Tools

ToolDescriptionBehaviour
citationsGet papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.Read-only
get_entitiesGet the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.Read-only
get_figuresGet a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.Read-only
get_full_textFetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).Read-only
get_paperFetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use when the user names a specific paper or pastes an arXiv link.Read-only
get_structureResolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.Read-only
referencesGet the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.Read-only
search_papersSearch 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR base editing'.Read-only
similar_papersFind papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.Read-only

Directory listings

DirectoryListingTierFirst seen
Official MCP Registrycom.tomesphere/tomesphere-2 Oct 2026
mcp.soListed there according to MCP Toplist’s dataset; not collected by InvokeRank.